NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208499_1005924

Scaffold Ga0208499_1005924


Overview

Basic Information
Taxon OID3300025789 Open in IMG/M
Scaffold IDGa0208499_1005924 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2783
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001201Metagenome / Metatranscriptome749Y
F028984Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0208499_10059241F028984AGGMIAWLFGDLFYWIALIALVGGAILYVLSYFVGFIPMLKAHAMICKVVGLLLVLSGGFYVADHHGYQRRVVEDQAEIDRLNAEARAKEAELSIKLARASSQLKKAK
Ga0208499_10059244F001201N/AMYKEGRQIVTDIAHEVDGVVKDVKAVQKKAKGLLGFLSAVFGKKEEVQPEVAQPVKKVKKKKEPPPEFDENLIYQQVSDALIKFFQAYNALKNYVKEQEEFALHANNDEGQEAAIKITIANLQMEKLNTELSDYMVYHVPIELKDLYTRVNQQIGHIANVQALARREEMLKERRAKWQRQQKADLIKGRMVALAVTALIMMYVWIMILSLTHSQSY
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