NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210114_1048726

Scaffold Ga0210114_1048726


Overview

Basic Information
Taxon OID3300025795 Open in IMG/M
Scaffold IDGa0210114_1048726 Open in IMG/M
Source Dataset NameWetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)874
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Source Dataset Sampling Location
Location NameUSA: San Francisco Bay, California
CoordinatesLat. (o)38.05246563Long. (o)-121.76914021Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038432Metagenome / Metatranscriptome166Y
F061961Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0210114_10487261F061961N/ARELGIDQLGYACLVLRKRHDGVDASAAGWVEALQLPRAALRPAGRHVRRLFETHDALSALTSDTELLERRLRVVEDAVVSQETRFTGGRWHSELLTLRLEHGLPFSAELDPSTARLVRELDGSRTLAEALATAVDGDAAGEGLELARRMLEIGFLELG
Ga0210114_10487262F038432N/ADSPTATKRVVRAWSARLNAYDNAGVARLFARPAVIVQGGSSLRLETPAQIALWHRLLPCAGRIVSIDVDGELATAVFRLANGKHRHCDAPGQKAAAVFRVRHGKILAWVQVPVPPPAASGPTA
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