NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208425_1114622

Scaffold Ga0208425_1114622


Overview

Basic Information
Taxon OID3300025803 Open in IMG/M
Scaffold IDGa0208425_1114622 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)620
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058951Metagenome134N

Sequences

Protein IDFamilyRBSSequence
Ga0208425_11146221F058951N/AVEAEGLEPDQLNALLVERFLKLKERLSREVERLTDEQGLFFSELLDLFLAHVQANRDERTVGKYRQQLSRYQKVIGDYRIRLHTSQLTDKFVLSLRKAGLNDHSCNSYLRAVRAILNWSWEQGQIPAAIKVKSVRSSKPLPAVFSTQQLEDLRQHLEDGWQEAKRRRFLVLLRAWWFLRYTGMRGGELLALKWDNVYPDRIELRST
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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