NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209199_1006352

Scaffold Ga0209199_1006352


Overview

Basic Information
Taxon OID3300025809 Open in IMG/M
Scaffold IDGa0209199_1006352 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9982
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (13.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F015342Metagenome / Metatranscriptome255Y
F025285Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0209199_100635219F015342N/AMSVAANMPARNVKGNVQAQDKILYVANKLGLSSLKYMQATTRVIYDQSVTAATQHTLFEGAAARSFPLTNLGANGNQFQVDEALLVEKIAFFVPDAADGENFAALNGESVKFDLIIGNKTVMKDVVVEFAGQQAFFNDGAAGSSVVDLEGVGILIPPQVEFKVVAKPLVTNTRAAQSIRLGCYLFGTGVLLNFNTSI
Ga0209199_100635220F025285AGTAGGMVNAKLGATMPGQQTTRYIYDSITAAAGQANYNFFQTFAGKNDLQSNLTTNKLDSSESMVIKSIYVSGNITPGFSGHSNINITVGNQVVLKDFNIAFNSTNRGLAFDRLHSGVTSSNNVEIRLLTDIVIPPQVNFKVTMELAEGSAVLVGENLTLGLKGYGTIFSAGSTF
Ga0209199_100635221F000710N/AMPMNDISYRQGLRTKGFQTTVPTTGADQTLSLSGLAKQFEGILLTSTTSAAPGTVVDPTQLRITLIINNDVVIDDDVAFHYALSATGGFTGGFPFFIPFPRRLTGQDTILLKVTNSSGASQILNTTVYYRNEI
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