NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208785_1001833

Scaffold Ga0208785_1001833


Overview

Basic Information
Taxon OID3300025815 Open in IMG/M
Scaffold IDGa0208785_1001833 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9167
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (38.46%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005579Metagenome396N
F029287Metagenome189N

Sequences

Protein IDFamilyRBSSequence
Ga0208785_100183313F029287N/ATNDLYQEVFLIICEKDEDWILEKYNSGYWEGLVIRIVVNQAYGQYTRFNKLFKQEPMLDSSKLEIPDHDVDYRNEILHYCIDIVLREYDWYHTKIWKLYSEGGRNIKPKSARSISRATGISRHEIDKVINEIKYKANKQFKKYEPYI
Ga0208785_10018333F005579GAGMIANNTTNQDFFTMLKWKDITIGMLQEIGELPDDLNPIEKTAHTVAIIKGLPYEEVEKWTLNDLRKIDLSFLEQEPKHRLKWTFKHKGRRFKLVKNAKAMEAHHFIELQELGDSDKIEALHKIIACLSYRVNIFGRKIEDDYQWKVDNFKDLPAPQFYKYSLFFSALYPKLLKTTLTYLKGEVKKAKEMFSDGSDSSID
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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