NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209193_1017402

Scaffold Ga0209193_1017402


Overview

Basic Information
Taxon OID3300025816 Open in IMG/M
Scaffold IDGa0209193_1017402 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2334
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086294Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209193_10174023F086294N/ANVVSQPSMIKRNRSFGKELDLTEGLKIAKKKGAKIPYGTFKKLAAALEKLGCGKSAGGRILMSNGGATLTDCAIKGREVLEKGLKNGFEKGAQGDLARKILGTGKFLKDAVSLRGLFGPAALAFTVAAEAGIVGYDMLSGGKSFREAVGDSVFNYMLGDKTKINSEEEFIKRLKNVPGSPGQGFRGFTDDDINKMLVFKSKLDDMQTGFSNYSDLLDINEKIKENTERQNIGSGFFPDESFQLEAEKDKIQADIRDYNKVGTPRNVTEYMISDEGVKGGDALARGTLLAKESQLLDAYRSSPKGIENLKKDLIDTRFNLEQIYNPTKYNENAKYFMGLPKSEQSKLMSYENMLDPFREKFMSKPKSEQSRIMSYGYKEGGIASLNVNKK
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