NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209193_1021329

Scaffold Ga0209193_1021329


Overview

Basic Information
Taxon OID3300025816 Open in IMG/M
Scaffold IDGa0209193_1021329 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2048
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009045Metagenome / Metatranscriptome324N
F043692Metagenome156N
F070578Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0209193_10213291F070578GAGGMNLTFVEFDPIQAKKDREIELQRRRKQYPLPLDSETREEIVRRCAILRHMGDDGIGCDYNQSNDQQLVDYYSWVLDEEHDDLLA
Ga0209193_10213294F009045AGGAMNKLNSTFKPSNTFRGNRHIVKGQIIQGDDFEVDGIRRAFWSNPDKTHSCHLFRLKGGSVIDRVTVDSFEGETLNEFIARTETILIGGSK
Ga0209193_10213295F043692GGGGGVSILKSEIDLKGTKPDYLRTTKNLYSHSVDGYKLFFSYQTLVAIDDLISVNYWSNTTARHLYWINPNKDIRVENFDELAREILEKAQLLEKARSPLANISAISSIFSIMANAETEESIRASNEQRKRFYLTQEGISFPNDWDSLSVADQKKRLDMCDYIGLNKATEVLNNPTSKTI
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