NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210046_1032728

Scaffold Ga0210046_1032728


Overview

Basic Information
Taxon OID3300025825 Open in IMG/M
Scaffold IDGa0210046_1032728 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG18_big_fil_WC_8/21/14_2.50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2247
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002298Metagenome / Metatranscriptome573Y
F003801Metagenome / Metatranscriptome467Y
F051695Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0210046_10327282F003801N/AMKNTKESVYIFSVPIDEIKEHIMCRSMVKIKEIITKTKKIREMNYEFDRQMDIAPPPKTDAEQEKKTKKIDNFQEEIRKRWEEVWRLKEEIHTTTDIIYELSQIRRKYIGVAEEEQMSWADIRREIIDGLKKSFC
Ga0210046_10327285F002298N/AMKKAKASVGIAPTLEYKIKKSILSRTFRKIDNMMEKSDDIDRMNLEFYAMVGKTCGPQTVFEQQRTTERIDAFRRDIGKRWAENMRKREEIYEIIDILYELAKIENENSDAGRSKQMSWAEIRKKIQEKMVKILSR
Ga0210046_10327287F051695N/AMKKYKKFQMEYKKDFLLPRNLSTKEKDIFMYLFRLLRKKIDQGIYPEIYNDEIIYTKPDV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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