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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025832 Open in IMG/M |
| Scaffold ID | Ga0209307_1000442 Open in IMG/M |
| Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29105 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (25.49%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
| Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006343 | Metagenome / Metatranscriptome | 375 | N |
| F007652 | Metagenome / Metatranscriptome | 347 | Y |
| F015852 | Metagenome / Metatranscriptome | 251 | Y |
| F031053 | Metagenome | 183 | Y |
| F034543 | Metagenome | 174 | Y |
| F071094 | Metagenome / Metatranscriptome | 122 | Y |
| F074810 | Metagenome / Metatranscriptome | 119 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209307_100044213 | F006343 | N/A | MKIELPNSWEGVTIEQFQALQKILAEKGDEYATNVAIISIMSGVPVDEIETYSLKTYAKCMRTLSFLSEQLLGQVQKVVEFGGLRYDVITDVYKLNGGQYITLMHLMKDPDKVIDQLNEIMAVFLVPKKKTWWGWKKQPYNSDKHKEVAEAMLQAPMTIVQPLSAFFLSSYLMSAKHILESSVRKAEKIKKQAERKLRRLKQNTAG |
| Ga0209307_100044218 | F031053 | AGGA | MKQNEQHENYGLYITQNTYTMDFYCFSRDVANAYWSGEPCKKSSGKTSQEALSNYKNGLYSNK |
| Ga0209307_10004422 | F074810 | N/A | LINIERNSPNEIALTLKERGTATYYLFKFQSDNTEAVKYCIATDSSAFPNRYNRFTITEQTSPDNLNAQVEMTTEGQWRYYVYANVSSSNLDPTGLVELESGIVKVTGTTTPVTSYSGGNSNYVVYGS |
| Ga0209307_100044232 | F034543 | N/A | MIKIPKIEEVTQEANAKKITAYRIAKDTRLSTQTVYAYFKGDRVSVRTQEVIINYINKY |
| Ga0209307_100044240 | F071094 | GGA | MIIFLLTVSVCLLLLVFGMLIYIGYKVSELERTQDVIFDAAVSAEERNREIELNQEAILNAYSRQN |
| Ga0209307_100044243 | F015852 | AGAAG | LGGNIAIHLIKAYTPYLLAFLLGVIIASKGCGEPEVVTTVIEKPVPTIKYVDRWRTDTVRFVSKKVITRRDTIYQDRIVIRLDTMLLIDTFKIVETWLTEVANYDTTLNDIRLTWSNYQNRTENLKVELRKKPLGWALGVHGLVGLQSDFVENYKPLFGVGLQATIKRTYFSANYGYNGQHFIGVGVGRNLISK |
| Ga0209307_100044246 | F007652 | N/A | MNEIIYPEVRTYYICFDDERTEVKSYGWVEPNQVFETIWIFDEFTDEEQWAAELLEWGIIPEIDEQGNLVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |