NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210039_1046190

Scaffold Ga0210039_1046190


Overview

Basic Information
Taxon OID3300025835 Open in IMG/M
Scaffold IDGa0210039_1046190 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2062
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured archaeal virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014357Metagenome / Metatranscriptome263Y
F026802Metagenome / Metatranscriptome196N

Sequences

Protein IDFamilyRBSSequence
Ga0210039_10461903F026802N/AMYYYVPFSRNLTQGNTEEIATADHGHLVGVFLRFKSGTDGFHPFWGQISISNIGTTKEYLLKNGIYAIFQRGTNGFVLNDWCQPAFIPLDHDIRANHQVLLETFTWGADFISVRGHFVYS
Ga0210039_10461905F014357N/ARSGSKFIVKNTHPANISIIYDIYDAGDITNTMENGKDSKELTFLMYGQPAADVNTATDTQITHKNNPSEFCDFPFRGGVATKRKIDLYGIVYSSRGADDGAHAANYIRTKYLKLMKGRDVLFDSMRMGLLAAGRTVQTDGTFEAENGYDVGGENTDLYQKDALIFDQPIRFANGEELDTYWTTYVASTPGTFLSSELEIAYILKETQE
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