NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210039_1080263

Scaffold Ga0210039_1080263


Overview

Basic Information
Taxon OID3300025835 Open in IMG/M
Scaffold IDGa0210039_1080263 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1424
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096623Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0210039_10802631F096623N/ALEGQQTLTSPSSREFTLTYESQTSSSIFYYETPISGSCYVECDFVDVEPGTTNCIFLGNANNITSKTFLAIQTFPLSSFRGNKIGDGWVAIMEFDNSNIHNPNVLTWSYDIEPTGTFRLSKNTSTLKLHHNRTYSLGAKTTFIGEHLHAGFFSYAFASSKIKKTTFKNLSCGNY
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