NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210039_1124561

Scaffold Ga0210039_1124561


Overview

Basic Information
Taxon OID3300025835 Open in IMG/M
Scaffold IDGa0210039_1124561 Open in IMG/M
Source Dataset NameGroundwater microbial communities from aquifer - Crystal Geyser CG17_big_fil_post_rev_8/21/14_2.50 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1054
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Huberarchaea → Candidatus Huberarchaeum → Candidatus Huberarchaeum crystalense(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Development Of A Pipeline For High-Throughput Recovery Of Near-Complete And Complete Microbial Genomes From Complex Metagenomic Datasets

Source Dataset Sampling Location
Location NameUSA: Utah: Grand County
CoordinatesLat. (o)38.9383Long. (o)-110.1342Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001003Metagenome / Metatranscriptome808Y
F008120Metagenome / Metatranscriptome338Y

Sequences

Protein IDFamilyRBSSequence
Ga0210039_11245611F001003N/AMEKYKKFQTEYKKDFLLPHNLSPKEKDIFIYIFRLLRKKINTGIYPEVRNDEIIYSKSDMKSLISKGIILFQPYKRGWIITIHPTHITKNVECSWCGTKFNEKIYFRLKRMRCP
Ga0210039_11245613F008120N/AMKNTETSTSECVKAEVLYRRIMWRLNLLAGQIHESRKGFTCFYAMVRKKQNVSVGEKNEKDISWVEAFDDFVETWEEMENMKDEVDWMIRDIFFAVEREEEYKRKIKKYDSKIKNNKKRT
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