NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208872_1010699

Scaffold Ga0208872_1010699


Overview

Basic Information
Taxon OID3300025838 Open in IMG/M
Scaffold IDGa0208872_1010699 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4498
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002722Metagenome534Y
F030331Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0208872_10106993F030331AGGAGGMAKLTLPSGATVTLKDPNSLKVKDRNRIMKAGDGGSAAERGIAISNALLAAIIEEWSYDLLVPSVKEESIEELPIPDYSLLVKETESYIKAIFPELADTDLNRLNPDSPLENSNG
Ga0208872_10106996F002722N/ALRSTLYSYLTGSSIPTLNQVFTSFPKRINYQVNATAGQMSRAAAVIFIQSERETRLAIGGATNGWKRVDYTVVLQIFHHSLQNNAEDAMADFDTLVDNIKGTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA
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