NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208872_1015432

Scaffold Ga0208872_1015432


Overview

Basic Information
Taxon OID3300025838 Open in IMG/M
Scaffold IDGa0208872_1015432 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3618
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009261Metagenome320Y
F012316Metagenome281Y
F093078Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208872_10154325F012316AGGAGMSTTIIDQPAGPMHRCGKVWEGLHSLGIRGISTVNLLRKRHDLDALERSLARIIETANGHRAKGLPKGSPAYRVLAETADAKIQGFTSKWSVDVATIEAQAPALADLHDLCVPDKQVPAGVKLLVGLLGTILFLVLLGAASGLVHAGHDWVIRLIVR
Ga0208872_10154327F009261AGGAGMVITPSNSGNLVAGAGLGIFAWSAFLKADKIPWLRNLLTTRRKEMTLDWIDKNKGISLLGLETINLGIHGILSANAVIFALGNTAFNIFMLWAYLPFRKMRARKKHVDNVLKGVS
Ga0208872_10154329F093078AGGAGMKLICGFLLFVAAVAITGGLYLTIRKPAQKKTDLEKLENVCQQIFYRIRQLDDYLARIYTTTLFRMIPSLHEERSTVPERRSSAAEFPHDSVVIPAE
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