NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208917_1063953

Scaffold Ga0208917_1063953


Overview

Basic Information
Taxon OID3300025840 Open in IMG/M
Scaffold IDGa0208917_1063953 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1421
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016795Metagenome / Metatranscriptome244Y
F031064Metagenome / Metatranscriptome183Y
F045676Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0208917_10639532F031064N/AMTTTIKKPKFKKGDVLLSRDNQILQYVGEFDHPELGKIAEVRIYRTDRYVGIRFEDVKLHPFFAXPLNLNLGE
Ga0208917_10639533F016795AGGAGMTEELQKFMTEELGIIDRLGTDPLEGLDLFEDVGGNVWTLDQIIHEFKNQXAPKEYHTPN
Ga0208917_10639534F045676N/AMSAERVPYPELDCALAMSKARGNLNFLVNRIKEEWGETFTTAQAIEDAHTALTEAQKEYEKVLTLLRQSTKL
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