NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208917_1184507

Scaffold Ga0208917_1184507


Overview

Basic Information
Taxon OID3300025840 Open in IMG/M
Scaffold IDGa0208917_1184507 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)704
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049595Metagenome / Metatranscriptome146N
F064194Metagenome / Metatranscriptome129N
F084181Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208917_11845072F064194AGGMKTYLVEINAVVWKQIEVRAESVEAADTLAHELFNLTADGCPERYDQQTQMIWEDDSTNIRNWKEVM
Ga0208917_11845073F084181GGTGGMKTKTYDVQIEAIVTKTIRVNAIDKDAAYELAHEIFTVTRDDHEERYEQHTLNIVEVSDEDRNEKPAWERGDK
Ga0208917_11845074F049595N/AVSDYRFENHGSIFLCQPLNGAAKDNLDQACEGTDDFHIRWGDALVIDHRFANDIAQQLIEEGWVIE
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