NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209182_10041545

Scaffold Ga0209182_10041545


Overview

Basic Information
Taxon OID3300025843 Open in IMG/M
Scaffold IDGa0209182_10041545 Open in IMG/M
Source Dataset NameLake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1344
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRussia: Lake Baikal
CoordinatesLat. (o)53.7598Long. (o)107.9791Alt. (m)Depth (m)0 to .05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002009Metagenome / Metatranscriptome604Y
F010983Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0209182_100415453F002009AGAAGMTPPTIAEMGDEAAAIIWRVMGKGSNKSAYGDWLLKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIKKEVTRL
Ga0209182_100415454F010983N/ATSWKIEQGIMSSLTLPKEENETLEDYARRVVKDSKESTSKAAEHGTRMHLELENILLGRATSTDEVLQPYIATLKKWSDENIEKTYWCEKALVGAGYAGRCDAYVRLKGIGDAVIDLKNRKVNPKSSSPFYEHSDTPQLWAYRIASENPKAACVSIVLASNDASKIMTRTWDDDELHQSGIAFQAMLKIWCWVKGYTPPGCKL
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