Scaffold Ga0209182_10140963

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209182_10140963

Scaffold Ga0209182_10140963

Overview

Basic Information
Taxon OID	3300025843 Open in IMG/M
Scaffold ID	Ga0209182_10140963 Open in IMG/M
Source Dataset Name	Lake sediment microbial communities from Lake Baikal, Russia to study Microbial Dark Matter (Phase II) - Lake Baikal sediment 0-5 cm (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	676
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Russia: Lake Baikal
Coordinates	Lat. (^o)	53.7598	Long. (^o)	107.9791	Alt. (m)		Depth (m)	0 to .05
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032154	Metagenome	180	Y
F047498	Metagenome	149	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209182_101409631	F047498	AGGCGG	VGLPGMWSQVIRMTINEADEWAIHNRASQVIFATDELSTAPRYNTKLNNYERVTEYAESLGAEMVVARYFGLDYDVNVSNGKRNADVGKGIEVKWTSYTNGSLIIYPNDRTEDVAVLVVGRSPEYFVVGWLPIQMAMQKQFKNSQQDSWWVGQSSLNPIGDLVRSSYA
Ga0209182_101409632	F032154	N/A	LAMGEFEMINLTTGERLRIDKDGTELRDEVNPPAIEWCDRGQHYAAKLGGRDEGGILWVCLECGRK

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