NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209603_1006530

Scaffold Ga0209603_1006530


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1006530 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9111
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102852Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209603_100653014F102852AGGAGMRNKIETIFGFDASLNREMEDSYYAPQMADELAVLQKRVKKSHPFAKFRHTADDALAIQLSPQSMCFDAKVLWDKDAYIVMTVSTRRERELPYADLDRYGIAYSDRSFTSLTRDLARATKLVKDTKSATSERVLEKVMQGTIDPFGRGLKQAQEKLDTLQRDVFSSMRNSVSNEALLEYSLATMEQRPVRADIRHQVEDCTNKYLESKRDLGDSVAACDGLQTLSIYKLKNIDKVFYHYRDTTAGEMQRVKHVDDVNKLPQEVLAKLSVLQATGIDAMENVGYSYDTKVLTSIGCVRKGAQDYDFVEDAMCVYVSPETMTEVEALAEY
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