NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209603_1019121

Scaffold Ga0209603_1019121


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1019121 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4395
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (8.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007892Metagenome / Metatranscriptome343Y
F043412Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0209603_10191211F007892N/AMGRLIEISPQQDVVNKINAKADFTHNINNTRLERYTVSTKNVFTGKNPSLFLKDTWKIVDDAFNSDQELLGGWLSEDNIYFLDYGLSVTDLKKAMKIAKFNKQLAIYDNVSQKVIEVA
Ga0209603_10191216F043412N/AMEMTKEELQRKVDELTQSLDSFNKNTEMLKQDLAEAQRKLKVADRPRISSLQMDEISDAIQEVVGNIDFSDTNAYDVDFEIDYDSRLAISSIEFNHVHDIADEIYSELENMFNITTTEDE

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