NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209603_1031772

Scaffold Ga0209603_1031772


Overview

Basic Information
Taxon OID3300025849 Open in IMG/M
Scaffold IDGa0209603_1031772 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3070
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033501Metagenome / Metatranscriptome177Y
F070137Metagenome / Metatranscriptome123N
F100941Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209603_103177212F100941N/AMKELKEYMEAKKKANALKWMKEDGYNSIQGFTQKEFNESVKQIKRKTSTTRRTHSKGNLWTHNSLPRIKQNIL
Ga0209603_103177213F033501N/AMNALQFINEMDRLAQVHFAEFGYDTCDQHDKQAVIKLLLDLIANTNKKI
Ga0209603_10317727F070137N/AMDLYLSLENNKLRNLHEDFRDEIWLAFHQGEVNDQDEFYTYFHEYLDNAVIYTSDCEAILSGNSEYHYEDHDLYGRPNNISQAAYACLHDYLMDHIDTPNWEQMETVLNEK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.