NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208645_1012234

Scaffold Ga0208645_1012234


Overview

Basic Information
Taxon OID3300025853 Open in IMG/M
Scaffold IDGa0208645_1012234 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5163
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004208Metagenome / Metatranscriptome448Y
F034149Metagenome / Metatranscriptome175Y
F053262Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0208645_101223410F004208GGAGMTYSLNPETKPFGYTRQDLFDCLTRIVAHPHKTITEHDQSRALAIMVVVDDYFANFCESDNNGGYYVAEQDATDFTDFVRFKLGIDDYDRVNIDEVLK
Ga0208645_101223413F053262GGAGMEKLTQEQRQKIEDALNSIPESVRTGMYATMEGIEKQLARGDKIIFYMSALENEPNGFSMHKMKVGGDE
Ga0208645_10122347F034149GGAGGMSISQKLVMEENEDPGFEIIHLSFRKRESSHLYGGPVNYYLGNIVFRLTNPDAINRIKYYLQENEDLRVAPDLELMEKYYEGLHFVFEKDEEENDDGEKYTPLDIRNKHGIKDEDVFIRAHRRNMAPLHDFIEYNEKFDCYRMHEYFQDTPVVRGIIQYLQDMKDGKPNPSRIVYHEQFINTLENLCWWWD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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