Scaffold Ga0208645_1044385

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208645_1044385

Scaffold Ga0208645_1044385

Overview

Basic Information
Taxon OID	3300025853 Open in IMG/M
Scaffold ID	Ga0208645_1044385 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2170
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032640	Metagenome	179	Y
F073494	Metagenome	120	Y
F074857	Metagenome	119	Y
F087434	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208645_10443852	F073494	AGG	MVSDKVWESREISMWVNNDESLHKLARQSESSNDFFDVLEMIGVFQLGGIKITPQNVKESWEDANG
Ga0208645_10443857	F087434	AGGAGG	MEHKGMKYLEAHKRWISQAKELIPQVPDFKPDFVKSLNERIDSGIPLTPKQFKSLKKVVWYLKKQTEGK
Ga0208645_10443858	F032640	GAGG	MRVIDSKISTLISRGLKGEAFDRRLSKRDRVVSDGTGKVRVILWNTEIATFDAQVDEITVKSGSYQTVTTKSRINAMLYGWAKGNPSISQRKWVWYLDTLCPLTKDRKSQEFQGVASFPLKVWR
Ga0208645_10443859	F074857	N/A	MPKNYRNPQSFREIAKQAQKLSEMAYLEAQQPKHLRNQVLMDHCYKQAKRLTNRLKNAGYWKNSVISLG

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