NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208645_1060560

Scaffold Ga0208645_1060560


Overview

Basic Information
Taxon OID3300025853 Open in IMG/M
Scaffold IDGa0208645_1060560 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F024320Metagenome / Metatranscriptome206Y
F030293Metagenome / Metatranscriptome186N

Sequences

Protein IDFamilyRBSSequence
Ga0208645_10605603F030293GGAGGMIVEILDDRVSIEALGLIPHFFERSLYIEGQSIQSVADKMDTLYHYGGFVYHLDGTIDDKGVYTSAHDDEDILDPIARIDKLGFTLWVYPYAIVGLTDDKGNQKIARFD
Ga0208645_10605605F024320GGAGMTIDEYAVECGGLEDNSGPTVDPLEHAMVEHLVEFDTEMYRLQSRRKYKGLSYRHLERLMIELHGEYWRDAL
Ga0208645_10605607F002858AGGAGMLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMRRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDKILFIASDELPEGE
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