Scaffold Ga0209014_10100535

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209014_10100535

Scaffold Ga0209014_10100535

Overview

Basic Information
Taxon OID	3300025857 Open in IMG/M
Scaffold ID	Ga0209014_10100535 Open in IMG/M
Source Dataset Name	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1132
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	Barrow Environmental Observatory site, Barrow, Alaska, USA
Coordinates	Lat. (^o)	71.29055	Long. (^o)	-156.788643	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040400	Metagenome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209014_101005352	F040400	N/A	MTHSEFGPQGAAADRFLETLDRLDMPEIVALGAAGGGVVGTDALDPQVIARAELRLELREIARRSGLLDAVRAIGREVERWAGSAQHWFPAGVAGTSEVAASLGPRLTALPVVLDAAYGVVLADQLREAELTLLLGPWRDLAGDPFGAGDPDETRDADEADGRGADDGLGADVGGPGAEDQPG

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