NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209099_1000189

Scaffold Ga0209099_1000189


Overview

Basic Information
Taxon OID3300025858 Open in IMG/M
Scaffold IDGa0209099_1000189 Open in IMG/M
Source Dataset NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan - AD_JPNHW2_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70328
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (69.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location NameJapan
CoordinatesLat. (o)35.92Long. (o)139.63Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055453Metagenome138Y
F071209Metagenome / Metatranscriptome122Y
F097281Metagenome / Metatranscriptome104Y
F102589Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209099_1000189106F071209GGAGMSDNNTYVPMNELIREKEKSWTFTHINLPYAEIAKKGIVIWCVENLEGRWTMLGGNKFGFEDGTDATMFRMQFGLGI
Ga0209099_1000189111F055453N/AMKLKDIINESATDVVARFYKEASQEADKFYNPEDVKYKNLNKEYYEEHFKQWFSEEVVPVFTKPVTKPQPEFTNAPKEGKLQSPGYRGLNYALAAAGLPYNHKVQRYEPNATRMIASQTMDGARNNNGQ
Ga0209099_100018928F102589AGGMVVINIAMSPLKKAIFTEVREHHEKAASFDDEQLNKLMFHHPDGLRLSYSGFVILKNIFTVYSFAIPETIKSRHQYGMSKMEYPYFFTKRRLILFSEMDSMVIKLHGGIEGFLETCSQLD
Ga0209099_100018998F097281N/AMNKATTPPVNLKEQNAAHTFRVTIRDRDHFYKLVNWLNTNVGKGEDKWTMEGRVLKTLKQGKTVAPKIYIFKEDFDPSSSLYLSLL
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