Scaffold Ga0209483_1000306

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209483_1000306

Scaffold Ga0209483_1000306

Overview

Basic Information
Taxon OID	3300025862 Open in IMG/M
Scaffold ID	Ga0209483_1000306 Open in IMG/M
Source Dataset Name	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	45035
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (46.15%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location Name	USA: Barrow Environmental Observatory site, Alaska
Coordinates	Lat. (^o)	71.299	Long. (^o)	-156.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017820	Metagenome	238	Y
F088797	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209483_100030611	F017820	N/A	VNEENNSFNEAVSEWRRKNGIRDDDSVLQMLELLKIFFQNVKIEIPPDTDSIQLVTVRVSLQTLTQLTKEFSKEARELKQEIRSVPKITQQLSSGRAVAFLCVAIATLLAGILIGKFLL
Ga0209483_10003066	F088797	GGAG	MKTTLIEIEAVLSNATAELSMPKPNVKKAKRGIEVARKKVVDLVDGQSGRNLLLEAKRKLVLVYLGMAEDQFTAADTEIFAILAKERALQDEMERARKNN

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