NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209483_1002025

Scaffold Ga0209483_1002025


Overview

Basic Information
Taxon OID3300025862 Open in IMG/M
Scaffold IDGa0209483_1002025 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14656
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Barrow Environmental Observatory site, Alaska
CoordinatesLat. (o)71.299Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009276Metagenome / Metatranscriptome320Y
F051278Metagenome / Metatranscriptome144Y
F053999Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0209483_100202510F009276GGAMGVVIIPFDYEQLPDAQRKKIVPICIASVDRYGNPIARIWFEKGVAPVQDQLRGLARYRLGDVQRVSELAEITVHKLWERHGEDAGIWPWRRVLVRAMWEARDLAAGDSRWHINHTVPLALDSLEGDLYGNGPADPKRYDEIYQERLLLDLIERRIDEDHRQEIREVFKMLRQGYTWEEVAQRLGNQKPEALKKRFWRWMKRNFPQKSRQKPLHTGRRRMP
Ga0209483_100202516F053999GAGGMQQLRKRAVAYGCLVLLSGLFACSRPETRSPIIEKVEQAGSGSLTAVSKDGMREWLGKHKDVAYQADEMCKPVRLNATAQWAESTEGRLCAAARDLTFWRSGPVTGDDKTYLPGLK
Ga0209483_10020259F051278N/AMKGESPEQKWDRLQREYQTAVQASYPNPERHGCAGTDVLRDLAVRSTRFEDLEEDSHWKHVIHCAPCYREFLDLRESCRLGDEAKVQRESR
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