NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209483_1033312

Scaffold Ga0209483_1033312


Overview

Basic Information
Taxon OID3300025862 Open in IMG/M
Scaffold IDGa0209483_1033312 Open in IMG/M
Source Dataset NameArctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2532
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location
Location NameUSA: Barrow Environmental Observatory site, Alaska
CoordinatesLat. (o)71.299Long. (o)-156.61Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014439Metagenome / Metatranscriptome263Y
F016589Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0209483_10333122F014439AGGAGMAVTLTLTDVDPGGTQIYAFGTVALSGNYPSGGDAIDWTTLVRQIGLRGETVESSMADPAYGPVQASFTVQGGTPNQYQMQQGAAANNWKMRGYTTGSAGAEFTGGAAYPGSAISDVITFSAQFRKLT
Ga0209483_10333123F016589N/AMIKIIRETQEAPENVARALMLAGGCNRFGEANYRAVWGWSRLDWIGGKWEDHDPASGSLVREVIELRREPKYLPHDRWHIERWMPPESYGSAAEWQAQTTEFVNGRSVAALGPYPSRGEYEHCFTLEGPRGEFVQLTPAAARHIARAIETSRGVGTARKKEALEERARREERAYDSFAMDAMS
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