NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209308_10007941

Scaffold Ga0209308_10007941


Overview

Basic Information
Taxon OID3300025869 Open in IMG/M
Scaffold IDGa0209308_10007941 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7656
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044458Metagenome / Metatranscriptome154N
F054888Metagenome / Metatranscriptome139N
F069473Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0209308_100079411F044458N/AMKKQEKKTYSSVTLKMLEEYQAEKKEFHTTWGDKHRIDRLVSVDLRVKFMKAEQLFKKSVAEKNDIQTQKMIQMMRRAYVVLMDELMSLGYKPLEPHIRCFDWDGQIWYVTDLDYEIPRAMQMYKSEGKANFISIQELLRCVPKELMDMRLELAMMFEGSKFVRIEKK
Ga0209308_100079413F054888AGGAGMDFFEENSGEGNGSNSYLKFLAKEKAWYIGENVYDMEYILLDPDTIQTGLGRYSGGYEFEFSDIPFSKVENKEGWKKAFSVWAYTSDKQVVQWERAAWGELQGFKSMCEKFWMQKAANEGQLPCFRYLGSRGVKFDSGFSSEVPEFEFVAWKPRPAEFIIPAWANDEDEADNKKEAESPVTKTVVTDEDIPF
Ga0209308_100079417F069473N/AMESLDMKTGIKNKRNKLTERTTTQAIWVDSEIHQLLKEHQVMSRSSRSLGELAAHYIKLGICDARSQEK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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