NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209308_10038207

Scaffold Ga0209308_10038207


Overview

Basic Information
Taxon OID3300025869 Open in IMG/M
Scaffold IDGa0209308_10038207 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_120405 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2656
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F104032Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209308_100382071F104032AGGAGMAISSKVYGKSQYSIGIKQKAVTAFEDGAATDTAYQLLPVINVSAPVLNLVESGEIRSNNAGMVELDIDQFRTTKGGFITMDFEVPAERDLIVRMLANVLQDHGESGSGPYVHTIQATSGAALARPDFTGSSTAGIPSVFDIGLYYPESAQDKMITSAVLQSLTMNFDMADGRCLLSGTFYSGMTSSSKFLVEQTLSANSAAPTLSSTSPTQIESYFDVKKLDVDGTSLADMVITAVSFTFENNVARVGRDSSGDAEAYAFGIPSVNITGEVSLMYDANFDFGSGGNVLQDFISGNTATLKLQQGDGTVSTAGEMNIECEIYSTAVNLDPNADTGAVITIPFKVVQPTSSGAASGTAFKFEYADSTPSTGW
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