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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025870 Open in IMG/M |
| Scaffold ID | Ga0209666_1000457 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 31803 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (20.41%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Saanich Inlet, British Columbia, Canada | |||||||
| Coordinates | Lat. (o) | 48.6 | Long. (o) | -123.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005706 | Metagenome / Metatranscriptome | 392 | N |
| F020903 | Metagenome / Metatranscriptome | 221 | N |
| F029278 | Metagenome / Metatranscriptome | 189 | N |
| F081203 | Metagenome / Metatranscriptome | 114 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209666_100045710 | F081203 | GGAGG | MMDKYEFYYRQKQEWDYWQANQRHNFLSDRLLAIISQVQWNKGILKRVKLSDNDLEIHQNRFSNLITEVVKISIELKELAINYNPKRMKQLIIILTKIKNHNNEPIENS |
| Ga0209666_100045716 | F005706 | N/A | MKESKVLKALGLSWLDIQNMLTNGMTMPEIAKKYKITYISLVQAYRIQKKDFKYIDYKQPKKEVEDIKIVSSSFDRLYTEESLNENELLAFYKYEQKNKAYFDFN |
| Ga0209666_100045733 | F029278 | N/A | MEITIPTKWEDVTIGNYINLRPVLNSKLNPIERVINILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLKDKRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAQDNEEAIFNNLHHILTTICRPVKKTLFGWKHINVDSEILRKTADNFLNNMPMTIAYPIGVFFYTHSEDLTKVIKTCLMEQAEKMTKEAREELDLVNDGDGGTP |
| Ga0209666_100045734 | F020903 | N/A | MADQLDIFGFDVDQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVQKEGLVYKGSLQKSIRMPVKMFGFRMVATLYLADYYDYLNKGVKGIGGTRKYKKGVKLNVPEPWVIKAPNSPYEFKKGPSVSHVRQWAKSKGLNEYAVRNSIARTGIRPRYFFDNCMQETFYGEAFNKFKTDIRIVSGERIAKGLKEILKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |