NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209666_1028835

Scaffold Ga0209666_1028835


Overview

Basic Information
Taxon OID3300025870 Open in IMG/M
Scaffold IDGa0209666_1028835 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3195
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028035Metagenome / Metatranscriptome193N
F042572Metagenome / Metatranscriptome158Y
F076505Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209666_10288355F076505N/AMGLLAILSSFVMSFLGVILMIHLDFWTGVLLTITGMVCLLRALPRTNEDI
Ga0209666_10288356F028035GAGMITYDMLQQVEGDTDKHSNYQLNQYEFPFPENSILIERDKEMNRILNKPIIITTSNNNNCQQ
Ga0209666_10288359F042572AGGAGMSRNLIIYKVEYRLRSDPWERGKHIKTKRIVMTPDEVNQTGGYWRNHRNVERKFFKQMDNIEGDTYNSRYSIWSIKKA
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