NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209666_1061975

Scaffold Ga0209666_1061975


Overview

Basic Information
Taxon OID3300025870 Open in IMG/M
Scaffold IDGa0209666_1061975 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1956
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022889Metagenome / Metatranscriptome212Y
F023556Metagenome / Metatranscriptome209N
F063584Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0209666_10619751F063584GAGMARLISRTQVEEIQDFIKNTSFAQNVTISGSLLVSESFVMGSDPDTKSQMTGSIEITGSLTLDGPFNVIGDQALNATASVSLESLDTQLFGGIKPEDFGAMDATIYVSSTSGNDTNDGRTQQFPVRTVKRAAELATAGDDGRFGLPTGSLFTGFRIEVSAGTYLEQNPIELPKNTTVWGAGLRVTKIVAKNENEDLFWVNSGCYLSEMTFAGLRVFPSVDD
Ga0209666_10619752F022889N/AMSRKVPNIYTGNTVKKRDRQSFKTFVLEVIKDTFINEFTPTSSSLDLPTQKLFTLFLGSKDGNNDGDLLDRVDIEGYRFNYEDLQVDNAYDYLDVYLYGIKQDRAKYNVKLYDGGGTELLTGQYASGSKEIRMVFSEDITRVPTDVPLSAFTIKGKIVEIE
Ga0209666_10619753F023556N/AMKEVNAPNTFSGIPSDKVNGDRYEFNHPLYWIFKVENMRIKTLDSRLKDKRKPHARFDVFMYLLTDDSQGELFVRPQDYVYEQVSNDFYVKMKRTNFPVVDRNGDPWSFSINDRIFIKGDIENVN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.