NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10000907

Scaffold Ga0209757_10000907


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10000907 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7063
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (31.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F015147Metagenome / Metatranscriptome257Y
F021787Metagenome217N
F025853Metagenome / Metatranscriptome200Y
F057669Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100009071F015147N/ALGLNELDAWLAIIGGATLTATILVALSGNGPEIMRFWRVFFLNL
Ga0209757_1000090711F025853N/AMKKFLINYIPAVHEGQVNSDDKAYFYRVEIDEQFANRSENDNSAGLAAKDTESGLWKRFRFDGIQSAVAL
Ga0209757_1000090713F057669GGAMTRITPSEDWPGFTFEFSNGWSVSIQQGEAHYCTIGKTAEVAVFDPEDNWYVYDEDSQTLEASEQDTTVNGHLDADAVAKIISIISIISQEKIDIRTSK
Ga0209757_100009073F007550N/AMKKIILLLFLFSVSLNAASLKIVHVQQKTLPNGNAYGLESGIYFELTDLHPFVMYKLQYSEDLKKWKDLVHLGTYKMAMTSPYWTWKELPPHQCFFRIVEAW
Ga0209757_100009077F021787N/AMTDMISCEEVFEADVNARAEFDVVCDEWLNEAILEQDAEEDLVECEGCGEQWYRPEGHTSDTVPECQKCYKNDPYWC
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Institute for Fundamental Biomedical Research
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