NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10004122

Scaffold Ga0209757_10004122


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10004122 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3683
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007005Metagenome360Y
F011673Metagenome288Y
F082803Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100041222F011673N/AMKILPIYLQPRILSAVSYIHVAPSQEVALERINKVSRKLSDREMLYVMSLLAFDNLLDMVRDSEDFKDFVKIKRTIH
Ga0209757_100041224F007005N/AMFNNRKESQMDKTILVVEVTDYSWGKSYSIKKHATTLDKASEYLVSLKNLNDNNKVTYELFNRFGQFEVDEIEKVANDNK
Ga0209757_100041227F082803GGAMTSIYKKALDSTYLKGQVIALMKLSANIQSTINKLEEEIKKGENDNNKL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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