NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209757_10064025

Scaffold Ga0209757_10064025


Overview

Basic Information
Taxon OID3300025873 Open in IMG/M
Scaffold IDGa0209757_10064025 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1093
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)1000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005071Metagenome413Y
F011673Metagenome288Y
F017323Metagenome241Y

Sequences

Protein IDFamilyRBSSequence
Ga0209757_100640252F005071AGGAMTQLNTKEKCTLRDLIKIEIKSLTKSGEDGYGQYKYLEDEYVAFLLKLGRKLKLDIQQKIKAKKVYR
Ga0209757_100640253F011673GGAMTQKQFKVLPIYLQPRILSAVSYIHVAPSQEIALERINKVSRKLSEREMLYVLSLLAFDNLLDLVKDSDDFKKFASIKRTMH
Ga0209757_100640255F017323N/AMFNNERDNMNNPKQKVFLIIKKTYWASDGDTWFDVAESAKSKERAEQCIVALNTLNKDGKVSYLISEVNYDNK
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