NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209223_10035774

Scaffold Ga0209223_10035774


Overview

Basic Information
Taxon OID3300025876 Open in IMG/M
Scaffold IDGa0209223_10035774 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3193
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F093806Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0209223_100357745F093806N/AMFEVRWIQNESTVIRRQLPEVLGCSEFAVSMAIKDLLYCIAYNEDSQLCNLDFFQPLHLEVRFEYWAESVIYSSLHQKTIFNQGSFVVGADVHSFYGFYTAHQVLFESKRFKERKMFRDGGPLYELFYWRFISDQGIQVNMLFDREYCFRSYIGSFIEVKDNPNEYLDLQEALRSSITTKRFYVEQSQFYNVLASPIVGMLAYSKKHSCCAICDTKVELESEYGYCLNCAKELLLPFSEKTIGPIDYDGLRKSKLIDKNDFYSDYDYEYWITPDGELGYRDTNLPF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.