NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209223_10050989

Scaffold Ga0209223_10050989


Overview

Basic Information
Taxon OID3300025876 Open in IMG/M
Scaffold IDGa0209223_10050989 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2524
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F102852Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0209223_100509892F102852AGGAGMRNKIETLFGFDASLNREMEDSYYSPQMADELAMLQKRVKKSHPFAKFRHTADDALAIQLSPQSMCFDAKVLWDKDAYIVMTVSTRRERGLPYADLDRYGIAYSDRSFTNLTKTLARATKLVKDTKSATGERVLEKVMQGTIDPFGRGLKQAQEKLDTLQRAVFSSMGNSVSNEALLEYSLATMEQRPVRADIRHQVEDCTNKYLESKRDLGDSVAACDGLQTLSIYKLKNIDKVFYHYRDTTAGEMQRVKHVDDVNKLPQEVLAKLSVLQATGIDAMETVGYSYDTKVLTSIGCVRRGAHDYDFYVEEAMCVYVSPETITEVEALAEY
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