NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209534_10002994

Scaffold Ga0209534_10002994


Overview

Basic Information
Taxon OID3300025880 Open in IMG/M
Scaffold IDGa0209534_10002994 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16360
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017422Metagenome / Metatranscriptome241N
F085797Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0209534_1000299416F017422N/AMNLTLEKVEPIPENGKRIADFLAEHFWAEHSLSGEGSPPIEWGRASSHINHFLFEGIVYNVLDGDTIIGSIAAGADDYWWSAEQYIGDGWFYVLPEYRNLKDQIPPSHLLIDAVIDYAKEQDKPLILGIFNLEGVERAKKLFDKKGFHQIGGMYYRK
Ga0209534_100029944F085797AGGAGGMSKIGDFLIGLTEDAEYVIGGCENFEQFCSKMKKLNDMYLPSTLVDIWEEHVSSQEDLNVNHYIRRAR
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Institute for Fundamental Biomedical Research
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