NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209534_10004043

Scaffold Ga0209534_10004043


Overview

Basic Information
Taxon OID3300025880 Open in IMG/M
Scaffold IDGa0209534_10004043 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13711
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056916Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0209534_100040438F056916GAGMLSLFLLNSVAHSNELDNLITSSTALVNQIDRGIKLAGAGYAYANTGGALTNGSLAGTAHINTAQLDAYNAALGSMSDYQAYGNVQELLETKAAEEFGLMNAAVEEFTEVVVDMIAVVEVAEIAAEAETPDDKAEVQEYVVENEAALTITQDQVETYNQSLDDIEEHGNNASAFLGVAANEEAVAFLQQGAEDNNADPDLGTLTFSQDQQWVKLSHNGTNNASAVYLNGQQGSFDMNFYLSEAEWLAAGAESELYLTGPTALGYKCFMFEEDCDS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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