Scaffold Ga0207653

Basic Information
Taxon OID	3300025885 Open in IMG/M
Scaffold ID	Ga0207653_10000085 Open in IMG/M
Source Dataset Name	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0207653_10000085 Open in IMG/M

Source Dataset Name

Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	68322
Total Scaffold Genes	79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	52 (65.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

68322

Total Scaffold Genes

79 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

52 (65.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location Name	USA: Michigan: Kellogg Biological Station
Coordinates	Lat. (^o)	42.3948	Long. (^o)	-85.3738	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan: Kellogg Biological Station

Coordinates

Lat. (^o)

42.3948

Long. (^o)

-85.3738

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001944	Metagenome / Metatranscriptome	613	Y
F032974	Metagenome	178	Y
F057273	Metagenome	136	N
F061756	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207653_1000008552	F001944	AGG	MEPGVFLAALLIFVGIPAFTVLRIAKLRATRPQTSGDVTERLDAVEHRVDELQHELAETQERLDFAERLLTKAREDKRIS
Ga0207653_1000008559	F032974	N/A	MGGGVNARAPSCAGPAVPAIGVNADQDAAGRRRLDGSKPVPAKAEIIAAWQQRQDAIRSFRFAWIEEQCHPRGWMPNPRYPEREWQAIPALLVDRSYSVSKTLAVDGTMMRYGFELDRPEEPDGIDVVSPRGDNRGLGVRRHYAYLSVFDGRHGETRVSSLAGSPPPAIHRVEAPVDAQNLDTRAILLAFRPLDGAMGHLLIDRAITNERRAFYRGRSTFLFEERHDPSGWKTMLWVEPERGFLVSRFAVFFEQRWMVDVDIDYTQDAHWGWIPSGWRITEMLADGSRRLVSTATVSSYSINEPVSIQEFR
Ga0207653_1000008572	F061756	GAG	MGHVSRVAFLLLAVGCNGGRWNARRIDEPFPLEPSAAVWIWSAGKVEKWHAVFFPPDSVSGIPYTMALQCDSCRRSMPRAQVDSMKVGAYHGGKGLNALEVAGVIGAALLVEIVICSLEGAKTC
Ga0207653_1000008578	F057273	AGGAG	VRLEAPSLGGRLVGTLVALEHDTLAMEEDGQAAGLRLIIRTDSIARLEVRRERSMALEGAGVGLLAGALTALAADPNWLDENGDCTTLSCIAYKVSPHLDTRLAVFGTLGTLLGAIAGSGEKTRRWARVDLRRVHVAPAPSGGLALGISISF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207653_10000085

Overview

Ecosystem & Geography

Associated Families

Sequences