NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1005803

Scaffold Ga0208644_1005803


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1005803 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9057
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (23.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033052Metagenome / Metatranscriptome178Y
F096926Metagenome104N
F098952Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0208644_100580311F096926N/ALESIKKPYKPKADKVEKLTKVYAELKKAMPKANPLFKGVAKVLFLGIFFSSCSAQWHLKKAVKKNPNIITEKVIREIDTLIIRDSVRFNDTFVTKSIDTIKIENERFNTVIYRFHDTIRVVQTLKGDTIKITKKVVVPKLEVQKWYQAPDFWVVMFLVITIIWLIKKI
Ga0208644_10058037F033052N/AMQTINELANLLICVNATLFYIFVFGRDIKALARLTLIEQVMLRTGLAIPAIGALYNVLTAQYPPIPEILINIGYASLWTWASMFHYNTFVKK
Ga0208644_10058038F098952N/AMKTFLDEIGINIMQSIAGLFGSLLLLGKGSAQNIKQTFFAIITGVASANYITPVVCAALSISDTNYKNGVAFILGFLGLKGVEAVTKKFFKEKIDANN
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