Scaffold Ga0208644_1005825

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208644_1005825

Scaffold Ga0208644_1005825

Overview

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1005825 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9032
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (84.21%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048855	Metagenome	147	Y
F051066	Metagenome	144	Y
F053985	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_100582513	F048855	GGAG	MVTVQTHPDATRTVSYYGRLLGHYGPVRYKRTHARAWRCVSVLGALGYARDEADARRWLMEMVP
Ga0208644_100582514	F051066	GGAGG	MAKQIRTYDDMNGFYADQKPYPTLAGLDRYRRDPAADRHAYGQAVLSAIRALQARELARELPTHPCPCASGVWASDGHEILRAVRAQNRRA
Ga0208644_10058253	F053985	GGAG	MTFKIGICDHDEVAYVRIQIAAKAIHEAALLAYYCEGRKKQMFHDEMERELDGLLALLQIDKRATALAIDEATETLEYRIENLRAGLRAIERLPPRERDAAWTEATNTLREDDEFAAHAAKQIR

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