NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1010194

Scaffold Ga0208644_1010194


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1010194 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6469
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y
F006139Metagenome / Metatranscriptome380Y
F010535Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0208644_10101943F002421GGAGMKTCTICKGTIAYPDIQGKTHFVCDGRVPARKHAPFIQGMLASQSSADARWTREEQNKVDAAILHIARTKGFFTSDDIWQHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYAQRGGAHDHAQRLSVWAGI
Ga0208644_10101944F002794GGAGMSEGTAFNQGELTEETRKLVLERTEMVNHTMAMFGLIDDIMAISKNPHASIIRRLQTMKNQLSLNEPMPLYDVTTLDLAIKALQAHS
Ga0208644_10101946F010535AGGMTEPQIVDYSVYTGVMDNGQEILVQIFTSPESGQFLMGQIAFRSAASSWGVPIPLEKK
Ga0208644_10101949F006139GAGVDTQIVVALIGGGFLVLVALIGKIGSDNKKDHGQVHQTLGRIEQKIDNHVENHQ

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