NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1034254

Scaffold Ga0208644_1034254


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1034254 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3001
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001165Metagenome / Metatranscriptome760Y
F001807Metagenome / Metatranscriptome631Y
F019817Metagenome227Y
F020342Metagenome / Metatranscriptome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0208644_103425410F001807GAGGMTVLAIEHTEITDTHVTVTAVVDEMRLLYRATYFEPEEWAPALCQTTIELDPEEPIPLDEDGFCAYLDHLDPQWQ
Ga0208644_10342545F019817N/AMPAVAPVALTINQRNIYAYFLNHRKKYGNTPCFVPRVPSQLSRLEQYLQALTKLEEYGLIRVDRSSANYTGWIMREPKRG
Ga0208644_10342547F001165N/AMNNLPNRLCIPDATDYNRLQAMQLVARMKEAADKHGIGFIGGFVAPNGEKFVMSNMNDEDTQALLPDNLK
Ga0208644_10342549F020342N/AMSAVTDNINMFDRINLADCAKRRAAANVLDSTRFEGEYDTARLWMKYRLIKTTNYSYIED
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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