Scaffold Ga0208644_1053991

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208644_1053991

Scaffold Ga0208644_1053991

Overview

Basic Information
Taxon OID	3300025889 Open in IMG/M
Scaffold ID	Ga0208644_1053991 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2208
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.12	Long. (^o)	-75.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F074876	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208644_10539913	F000671	GAGG	MDKILCYSCNKSKHKLNAKKSSLLPINLLMCESCINSRLEPRWVIILAGRSNGADYVREFVLKKRYLGNEISASELLV
Ga0208644_10539914	F074876	GGAGG	VKEYYDVVNVVYIHDEKVFGTVQQLGAFASLVNYTKDGHEFNELLENSEFAIVDEIVFHHVEEDNG
Ga0208644_10539915	F000473	AGGAG	VSSNHFYDDKHFKYGINQWTGEPNKPVFYTPEMAKKVREIPKPSLLLMDVAMYPDFLALRLYEDNFLQFDGSAKERVIDYVMKVKKLIESYGVRCELEGMPSERVL

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