NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208644_1081444

Scaffold Ga0208644_1081444


Overview

Basic Information
Taxon OID3300025889 Open in IMG/M
Scaffold IDGa0208644_1081444 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1656
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.12Long. (o)-75.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087133Metagenome / Metatranscriptome110N
F101076Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0208644_10814442F101076GGAMNIGQIQELATLKDLNPIEQMAHEVSICFGIPYSDVEIWTMEKLKEEHKKLNLDKIPDTRIGYKFKHKGRRFRLIKNAKEMSAHHFIELQEVVKGDMVESLHQVIALLSYRVDWLGRKIEDDYQWKVDNFKQLEAEQFYGYALFFSQLFPRLLQTTLTFLKEENKQMREMFLGGSPS
Ga0208644_10814443F087133N/AMALNVKHQPTGTTYLPAYNDNVFVVYETDSGIYGQYNFKFICDVKDGSGNLLARLKAPIYYGSTNKGVFNISRLIENYVTHDWNYNDTAASGCTNSVFGYQAVFGYEYSTGATTAIVETTGVTSSTGNTIWNASLDPLSFLSFDEANYFMETAASGTASFLTNNQSKKLPIDAKAWLYAL
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