NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209631_10001025

Scaffold Ga0209631_10001025


Overview

Basic Information
Taxon OID3300025890 Open in IMG/M
Scaffold IDGa0209631_10001025 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37108
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (86.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031090Metagenome183Y
F031706Metagenome182N
F044465Metagenome / Metatranscriptome154N
F074819Metagenome / Metatranscriptome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209631_1000102536F031090N/AMRIVSVSWKTGKFIVTDQGIVIWSGPPELWHFLQEAIHGAGIRFTDQTAMQQYLRNFPN
Ga0209631_1000102543F031706GGAGGMIEGYLEDMLMERKYGVSLQEIQNLYSVMTWQVYLRLLQEDRRETVPSDLLEAAERYVIAFNDWDQQRNLED
Ga0209631_1000102546F044465GGAGMISLDKAKSLMKGPNYMEEMVMETFKASDLSLIPEDTEVDFDDDELLEAFQIAQSQIHLKNYRLANSVLLFCHRLLKERYE
Ga0209631_100010255F074819GAGMDIELIKELSNLGGLFIALIGAGWYVRYISDQHREERKILYDKDSVNDEALRNLMSSSHNQLIQIMTGVNTTLKEMTVAISELKHTIEHGERR
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