NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209631_10007444

Scaffold Ga0209631_10007444


Overview

Basic Information
Taxon OID3300025890 Open in IMG/M
Scaffold IDGa0209631_10007444 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10976
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014326Metagenome264Y
F026720Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0209631_1000744416F026720GAGGMTNSGMFEDPEKIEYLENQNKLLKQKLKEAVSKIKRIQGLEKHHAKNNGDLRIENKKLEKEIFTLKKDIEILREGNEHLGIYRQN
Ga0209631_1000744421F014326AGGAGMSRKLGDKAYESYLNYQAFSSDMPVHQINQTQWYLKFEKNLPAFFIKADDVFQQMPPLSFFATAERSTLFDFTGWQEQIETYFNLTTEEIKCLTDKEHLKNLPSTPPLEATSNT
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